University of Pennsylvania

Publications

See Google Scholar for a complete chronological list of papers and patents.

Highlighted

RNA editing underlies genetic risk of common inflammatory diseases
RNA editing underlies genetic risk of common inflammatory diseases
Qin Li, Michael J. Gloudemans, Jonathan M. Geisinger, Boming Fan, François Aguet, ..., Yang I. Li, Jin-Biao Ma, Jonathan K. Pritchard, Stephen B. Montgomery, Jin Billy Li
Nature   ·   03 Aug 2022   ·   doi:10.1038/s41586-022-05052-x
RNA editing Autoimmune disease Genetic variantion ADAR1 MDA5
Dynamic landscape and regulation of RNA editing in mammals
Dynamic landscape and regulation of RNA editing in mammals
Meng How Tan, Qin Li, Raghuvaran Shanmugam, Robert Piskol, Jennefer Kohler, ..., Charles E. Samuel, Mary A. O’Connell, Carl R. Walkley, Kazuko Nishikura, Jin Billy Li
Nature   ·   12 Oct 2017   ·   doi:10.1038/nature24041
RNA editing ADAR GTEx

All

2023

Ablation of Adar1 in myeloid cells imprints a global antiviral state in the lung and heightens early immunity against SARS-CoV-2
Ablation of Adar1 in myeloid cells imprints a global antiviral state in the lung and heightens early immunity against SARS-CoV-2
Julia Z. Adamska, Rohit Verma, Shakti Gupta, Thomas Hagan, Florian Wimmers, ..., Shankar Subramaniam, Carl R. Walkley, Mehul S. Suthar, Jin Billy Li, Bali Pulendran
Cell Reports   ·   01 Jan 2023   ·   doi:10.1016/j.celrep.2023.112038

2022

A Small Subset of Cytosolic dsRNAs Must Be Edited by ADAR1 to Evade MDA5-Mediated Autoimmunity
A Small Subset of Cytosolic dsRNAs Must Be Edited by ADAR1 to Evade MDA5-Mediated Autoimmunity
Tao Sun, Qin Li, Jonathan M. Geisinger, Shi-Bin Hu, Boming Fan, Shichen Su, Waitang Tsui, Hongchao Guo, Jinbiao Ma, Jin Billy Li
bioRxiv   ·   29 Aug 2022   ·   doi:10.1101/2022.08.29.505707
RNA editing underlies genetic risk of common inflammatory diseases
RNA editing underlies genetic risk of common inflammatory diseases
Qin Li, Michael J. Gloudemans, Jonathan M. Geisinger, Boming Fan, François Aguet, ..., Yang I. Li, Jin-Biao Ma, Jonathan K. Pritchard, Stephen B. Montgomery, Jin Billy Li
Nature   ·   03 Aug 2022   ·   doi:10.1038/s41586-022-05052-x
RNA editing Autoimmune disease Genetic variantion ADAR1 MDA5

2021

Learning cis-regulatory principles of ADAR-based RNA editing from CRISPR-mediated mutagenesis
Learning cis-regulatory principles of ADAR-based RNA editing from CRISPR-mediated mutagenesis
Xin Liu, Tao Sun, Anna Shcherbina, Qin Li, Inga Jarmoskaite, Kalli Kappel, Gokul Ramaswami, Rhiju Das, Anshul Kundaje, Jin Billy Li
Nature Communications   ·   12 Apr 2021   ·   doi:10.1038/s41467-021-22489-2

2020

Unbiased Identification of trans Regulators of ADAR and A-to-I RNA Editing
Unbiased Identification of trans Regulators of ADAR and A-to-I RNA Editing
Emily C. Freund, Anne L. Sapiro, Qin Li, Sandra Linder, James J. Moresco, John R. Yates, Jin Billy Li
Cell Reports   ·   01 May 2020   ·   doi:10.1016/j.celrep.2020.107656

2017

Dynamic landscape and regulation of RNA editing in mammals
Dynamic landscape and regulation of RNA editing in mammals
Meng How Tan, Qin Li, Raghuvaran Shanmugam, Robert Piskol, Jennefer Kohler, ..., Charles E. Samuel, Mary A. O’Connell, Carl R. Walkley, Kazuko Nishikura, Jin Billy Li
Nature   ·   12 Oct 2017   ·   doi:10.1038/nature24041
RNA editing ADAR GTEx

2014

Genome sequence of the cultivated cotton Gossypium arboreum
Genome sequence of the cultivated cotton Gossypium arboreum
Fuguang Li, Guangyi Fan, Kunbo Wang, Fengming Sun, Youlu Yuan, ..., Richard G Percy, John Z Yu, Yu-Xian Zhu, Jun Wang, Shuxun Yu
Nature Genetics   ·   18 May 2014   ·   doi:10.1038/ng.2987

2012

The draft genome of a diploid cotton Gossypium raimondii
The draft genome of a diploid cotton Gossypium raimondii
Kunbo Wang, Zhiwen Wang, Fuguang Li, Wuwei Ye, Junyi Wang, ..., Richard G Percy, John Z Yu, Yu-Xian Zhu, Jun Wang, Shuxun Yu
Nature Genetics   ·   26 Aug 2012   ·   doi:10.1038/ng.2371